Or destroy a view for a network by right-clicking the network name in Networks that don’t have a view are highlighted in red. Networks that have a view are in normal black font and For this reason, a network in Cytoscape may notĬontain a view. Some networks are very large (thousands of nodes and edges) and can takeĪ long time to display. IfĪ network is loaded from a file, the network name is the name of the (number of nodes and edges), which are shown in the network manager. Clicking on a network here will make that view active in the The network manager (in the Control Panel) shows the networks that are Loaded by the user and a view displays them.Īn example where a number of networks have been loaded is shown below: A network stores all the nodes and edges that are
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More details on how to edit preferencesĬytoscape allows multiple networks to be loaded at a time, either with Them to the foreground vs background layer are also available in the Edit menu.Įditing preferences for properties and apps are found under Edit → Rename Network… allows you to rename the currentlyĪ set of functions for bringing annotations forward, backward etc, and pushing/pulling Self-Loops removes edges that have the same source and target node,Īnd Delete Selected Nodes and Edges… deletes a selected subset of Other editing options include Remove Duplicated Edges willĭelete edges that are duplicates (having the same source and target nodes), keeping one edge, Remove Yet visualized), as well as an option for deleting selected nodes andĮdges from the current network. Representations of a network) and networks (the raw network data - not
There are also options for creating and destroying views (graphical The Undo/ Redoįunctions work on the last 10 tasks performed. In the Table Panel, edits to the network and to layout.
Well as Undo and Redo functions which undo and redo edits made The Edit menu contains Cut, Copy and Paste functions, as Minimized panel, for example Network or Node Table, and then clickingįor more information on the panels in Cytoscape, see the Panels Will minimize the panel the panel can be shown again by choosing View → ShowĪnd selecting the relevant panel, or by clicking on one of the tabs in the To dock the window again, click the Dock Window icon When you put the mouse pointer on a cell. Table Panel, similar to the one shown below. Have two Cytoscape windows, the main window, and a new window labeled This is useful when you wantĪssign the network panel as much screen space as possible. Undock any of these panels by clicking on the Float Window control The Network Panel and Table Panel are dockable tabbed Panels. Selected nodes and edges and enables you to modify the values of
Pointer over an icon and wait momentarily for a description toĪppear as a tooltip. These functions are also available via the menus.
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